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All students should keep an eye on this page for updates and headlines in the main publications venues where computational genomics results are reported.

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Bioinformatics - recent issues Genome-wide histone acetylation data improve prediction of mammalian transcription factor binding sites EGM: encapsulated gene-by-gene matching to identify gene orthologs and homologous segments in genomes Dealing with sparse data in predicting outcomes of HIV combination therapies PERMORY: an LD-exploiting permutation test algorithm for powerful genome-wide association testing Global sequence characterization of rice centromeric satellite based on oligomer frequency analysis in large-scale sequencing data An alignment-free method to identify candidate orthologous enhancers in multiple Drosophila genomes Genome-wide functional element detection using pairwise statistical alignment outperforms multiple genome footprinting techniques First insight into the prediction of protein folding rate change upon point mutation Mining metabolic pathways through gene expression Integration of pathway knowledge into a reweighted recursive feature elimination approach for risk stratification of cancer patients	BMC Bioinformatics - Latest Articles Sample size and statistical power considerations in high-dimensionality data settings: a comparative study of classification algorithms Fast and accurate protein substructure searching with simulated annealing and GPUs Automatic detection of anchor points for multiple sequence alignment Genome3D: a viewer-model framework for integrating and visualizing multi-scale epigenomic information within a three-dimensional genome Efficient Bayesian approach for multilocus association mapping including gene-gene interactions Forward-time simulation of realistic samples for genome-wide association studies Relations as patterns: bridging the gap between OBO and OWL An exploratory data analysis method to reveal modular latent structures in high-throughput data CMASA: an accurate algorithm for detecting local protein structural similarity and its application to enzyme catalytic site annotation *omeSOM: a software for clustering and visualization of transcriptional and metabolite data mined from interspecific crosses of crop plants.	Briefings in Bioinformatics - current issue Fast and efficient searching of biological data resources--using EB-eye Semiparametric prognosis models in genomic studies SynBioSS designer: a web-based tool for the automated generation of kinetic models for synthetic biological constructs Developing computational model-based diagnostics to analyse clinical chemistry data Molecular networks for the study of TCM Pharmacology Online tools for understanding rat physiology DNA barcoding: a six-question tour to improve users' awareness about the method
Journal of Computational Biology - Table of Contents The Cophylogeny Reconstruction Problem Is NP-Complete Manifold Learning in Protein Interactomes Re-Evaluating the “Rules” of Protein Topology Efficient Error-Correcting Pooling Designs Constructed from Pseudo-Symplectic Spaces Over a Finite Field Maximum Parsimony, Substitution Model, and Probability Phylogenetic Trees Adaptive Distance Measures for Resolving K2P Quartets: Metric Separation versus Stochastic Noise Biological Cluster Evaluation for Gene Function Prediction Data Structures for Parsimony Correlation and Biosequence Co-Evolution Introducing Knowledge into Differential Expression Analysis Haplotype Inference by Pure Parsimony: A Survey	IEEE/ACM Transactions on Computational Biology and Bioinformatics PrePrint: A Practical Algorithm for Reconstructing Level-1 Phylogenetic Networks PrePrint: Multi-Class Kernel-Imbedded Gaussian Processes for Microarray Data Analysis PrePrint: Probabilistic Models for Semi-Supervised Discriminative Motif Discovery in DNA Sequences PrePrint: A Mathematical model for the Validation of Gene Selection Methods PrePrint: Summarizing Probe Intensities of Affymetrix GeneChip 3' Expression Arrays Taking into Account Day-to-Day Variability PrePrint: Component-based Modeling and Reachability Analysis of Genetic Networks PrePrint: Assortative Mixing in Directed Biological Networks PrePrint: Identifiability of 2-tree Mixtures for Group-based Models PrePrint: A Max-Flow Based Approach to the Identification of Protein Complexes Using Protein Interaction and Microarray Data PrePrint: Computing a Smallest Multi-labeled Phylogenetic Tree from Rooted Triplets