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All students should keep an eye on this page for updates and headlines in the main publications venues where computational genomics results are reported.

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Bioinformatics - recent issues A simple statistical test to infer the causality of target/phenotype correlation from small molecule phenotypic screens InFiRe -- a novel computational method for the identification of insertion sites in transposon mutagenized bacterial genomes SomaticSniper: identification of somatic point mutations in whole genome sequencing data Detection of microRNAs in color space SCPC: a method to structurally compare protein complexes Prediction and analysis of nucleotide-binding residues using sequence and sequence-derived structural descriptors HydroPaCe: understanding and predicting cross-inhibition in serine proteases through hydrophobic patch centroids Inhibition of HIV-1 protease: the rigidity perspective M3: an improved SNP calling algorithm for Illumina BeadArray data Gaussian process modelling for bicoid mRNA regulation in spatio-temporal Bicoid profile	BMC Bioinformatics - Latest Articles Independent Principal Component Analysis for biologically meaningful dimension reduction of large biological data sets Markov Chain Ontology Analysis (MCOA) Analysis of Energy-based Algorithms for RNA Secondary Structure Prediction Fast automatic quantitative cell replication with fluorescent live cell imaging graphite - a Bioconductor package to convert pathway topology to gene network TranscriptomeBrowser 3.0 : introducing a new compendium of molecular interactions and a new visualization tool for the study of gene regulatory networks Propagating semantic information in biochemical network models Training text chunkers on a silver standard corpus: can silver replace gold? Automatic categorization of diverse experimental information in the bioscience literature The EnzymeTracker: an open-source laboratory information management system for sample tracking	Briefings in Bioinformatics - current issue Travelling the world of gene-gene interactions Probabilistic graphical models for genetic association studies A computational framework for the inheritance pattern of genomic imprinting for complex traits Tools for managing and analyzing microarray data Combining literature text mining with microarray data: advances for system biology modeling Caveats and pitfalls of ROC analysis in clinical microarray research (and how to avoid them) Building an HIV data mashup using Bio2RDF A large-scale benchmark study of existing algorithms for taxonomy-independent microbial community analysis The impact of taxon sampling on phylogenetic inference: a review of two decades of controversy
Journal of Computational Biology - Table of Contents iGLASS: An Improvement to the GLASS Method for Estimating Species Trees from Gene Trees Computational Techniques for Human Genome Resequencing Using Mated Gapped Reads Discovery of Protein Complexes with Core-Attachment Structures from Tandem Affinity Purification (TAP) Data Exploiting Genome Structure in Association Analysis Identifying Contributors of DNA Mixtures by Means of Quantitative Information of STR Typing HarmonyDOCK: The Structural Analysis of Poses in Protein-Ligand Docking Prediction of siRNA Potency Using Sparse Logistic Regression Biological Cluster Evaluation for Gene Function Prediction Data Structures for Parsimony Correlation and Biosequence Co-Evolution Preface: RECOMB Systems Biology, Regulatory Genomics, and DREAM 2011 Special Issue	IEEE/ACM Transactions on Computational Biology and Bioinformatics PrePrint: Mutation Region Detection for Closely Related Individuals without a Known Pedigree Using High-Density Genotype Data PrePrint: SimBioNeT: A Simulator of Biological Network Topology PrePrint: Exploiting Intra-Structure Information for Secondary Structure Prediction with Multifaceted Pipelines PrePrint: A Co-clustering Approach for Mining Large Protein-protein Interaction Networks PrePrint: A Metric for Phylogenetic Trees Based on Matching PrePrint: Predicting Protein Function by Multi-label Correlated Semi-supervised Learning PrePrint: On the Application of Active Learning and Gaussian Processes in Post-Cryopreservation Cell Membrane Integrity Experiments PrePrint: Quantitative Analysis of the Self-assembly Strategies of Intermediate Filaments from Tetrameric Vimentin PrePrint: Stochastic Gene Expression Modeling with Hill Function for Switch-like Gene Responses PrePrint: Gene Classification using Parameter-free Semi-supervised Manifold Learning