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All students should keep an eye on this page for updates and headlines in the main publications venues where computational genomics results are reported.

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Bioinformatics - recent issues A support vector machine for identification of single-nucleotide polymorphisms from next-generation sequencing data Fast simulation of reconstructed phylogenies under global time-dependent birth-death processes A novel web server predicts amino acid residue protection against hydrogen-deuterium exchange Detecting regulatory gene-environment interactions with unmeasured environmental factors Bayesian hierarchical model of protein-binding microarray k-mer data reduces noise and identifies transcription factor subclasses and preferred k-mers Improved ancestry inference using weights from external reference panels Analysis of Latino populations from GALA and MEC studies reveals genomic loci with biased local ancestry estimation OKVAR-Boost: a novel boosting algorithm to infer nonlinear dynamics and interactions in gene regulatory networks Measuring gene functional similarity based on group-wise comparison of GO terms tmVar: a text mining approach for extracting sequence variants in biomedical literature	BMC Bioinformatics - Latest Articles Learning smoothing models of copy number profiles using breakpoint annotations Protein complex detection using interaction reliability assessment and weighted clustering coefficient Calcium (Ca2+) waves data calibration and analysis using image processing techniques Efficient algorithms for biological stems search Disk-based k-mer counting on a PC MIMO: an efficient tool for molecular interaction maps overlap Phylotastic! Making tree-of-life knowledge accessible, reusable and convenient Copy number variation genotyping using family information Real-time interactive data mining for chemical imaging information: application to automated histopathology Greedy feature selection for glycan chromatography data with the generalized Dirichlet distribution	Briefings in Bioinformatics - current issue Obituary: In memory of Jack Leunissen Joint analysis of miRNA and mRNA expression data A comparative analysis of biclustering algorithms for gene expression data A reversed framework for the identification of microRNA-target pairs in plants A statistical procedure to map high-order epistasis for complex traits Data mining in the Life Sciences with Random Forest: a walk in the park or lost in the jungle? Towards a bioinformatics analysis of anti-Alzheimer's herbal medicines from a target network perspective Systematic analysis of the Plk-mediated phosphoregulation in eukaryotes Automated glycopeptide analysis--review of current state and future directions Bioinformatics tools and challenges in structural analysis of lipidomics MS/MS data
Journal of Computational Biology - Table of Contents On Contigs and Coverage CORaL: Comparison of Ranked Lists for Analysis of Gene Expression Data Threshold Group Testing on Inhibitor Model Bioinformatics Method to Analyze the Mechanism of Pancreatic Cancer Disorder A New Software Package for Predictive Gene Regulatory Network Modeling and Redesign An Efficient Algorithm for Upper Bound on the Partition Function of Nucleic Acids Exploiting Genome Structure in Association Analysis HarmonyDOCK: The Structural Analysis of Poses in Protein-Ligand Docking Prediction of siRNA Potency Using Sparse Logistic Regression Biological Cluster Evaluation for Gene Function Prediction	IEEE/ACM Transactions on Computational Biology and Bioinformatics PrePrint: Multivariate Hypergeometric Similarity Measure PrePrint: Profile-Based LC-MS Data Alignment — A Bayesian Approach PrePrint: Unrooted Tree Reconciliation: A Unified Approach PrePrint: Parameter Estimation of Biological Phenomena: An Unscented Kalman Filter Approach PrePrint: Protein Chain Pair Simplification Under the Discrete Fréchet Distance PrePrint: Biological Sequence Analysis with Multivariate String Kernels PrePrint: Proximity Measures for Clustering Gene Expression Microarray Data: A Validation Methodology and a Comparative Analysis PrePrint: Mining Featured Patterns of MiRNA Interaction based on Sequence and Structure Similarity PrePrint: Mining Quasi-Bicliques from HIV-1--Human Protein Interaction Network: A Multiobjective Biclustering Approach PrePrint: Multiscale Modelling and Analysis of Planar Cell Polarity in the Drosophila Wing