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All students should keep an eye on this page for updates and headlines in the main publications venues where computational genomics results are reported.

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Bioinformatics - recent issues Predicting giant transmembrane {beta}-barrel architecture 1001 Proteomes: a functional proteomics portal for the analysis of Arabidopsis thaliana accessions CONTRA: copy number analysis for targeted resequencing Probabilistic suffix array: efficient modeling and prediction of protein families Fulcrum: condensing redundant reads from high-throughput sequencing studies A subspace method for the detection of transcription factor binding sites PhyLAT: a phylogenetic local alignment tool Fast protein binding site comparisons using visual words representation Matrix eQTL: ultra fast eQTL analysis via large matrix operations Fast and accurate inference of local ancestry in Latino populations	BMC Bioinformatics - Latest Articles Profile-based short linear protein motif discovery. rCUR:an R package for CUR matrix decomposition Workflows for microarray data processing in the Kepler environment MELTING, a flexible platform to predict the melting temperatures of nucleic acids Handling the data management needs of high-throughput sequencing data: SpeedGene, a compression algorithm for the efficient storage of genetic data MetaMapp: mapping and visualizing metabolomic data by integrating information from biochemical pathways and chemical and mass spectral similarity The Partitioned LASSO-Patternsearch Algorithm with Application to Gene Expression Data Exploration of multivariate analysis in microbial coding sequence modeling SIS: a program to generate draft genome sequence scaffolds for prokaryotes 3DMolNavi: A web-based retrieval and navigation tool for flexible molecular shape comparison	Briefings in Bioinformatics - current issue Bioinformatics tools and database resources for systems genetics analysis in mice--a short review and an evaluation of future needs LEPSCAN--a web server for searching latent periodicity in DNA sequences Learning transcriptional regulation on a genome scale: a theoretical analysis based on gene expression data How to cluster gene expression dynamics in response to environmental signals Dissection of human MiRNA regulatory influence to subpathway Calculating transcription factor binding maps for chromatin Biological network motif detection: principles and practice GO-function: deriving biologically relevant functions from statistically significant functions Detecting coevolving positions in a molecule: why and how to account for phylogeny A toolbox for developing bioinformatics software
Journal of Computational Biology - Table of Contents A Generalized Linear Model for Peak Calling in ChIP-Seq Data Combinatorics of the Breakage-Fusion-Bridge Mechanism Mapping Reads on a Genomic Sequence: An Algorithmic Overwiew and a Practical Comparative Analysis Nonadaptive Algorithms for Threshold Group Testing with Inhibitors and Error-Tolerance Discovery of Protein Complexes with Core-Attachment Structures from Tandem Affinity Purification (TAP) Data Exploiting Genome Structure in Association Analysis Identifying Contributors of DNA Mixtures by Means of Quantitative Information of STR Typing HarmonyDOCK: The Structural Analysis of Poses in Protein-Ligand Docking Prediction of siRNA Potency Using Sparse Logistic Regression Biological Cluster Evaluation for Gene Function Prediction	IEEE/ACM Transactions on Computational Biology and Bioinformatics PrePrint: Mutation Region Detection for Closely Related Individuals without a Known Pedigree Using High-Density Genotype Data PrePrint: SimBioNeT: A Simulator of Biological Network Topology PrePrint: Exploiting Intra-Structure Information for Secondary Structure Prediction with Multifaceted Pipelines PrePrint: A Co-clustering Approach for Mining Large Protein-protein Interaction Networks PrePrint: A Metric for Phylogenetic Trees Based on Matching PrePrint: Predicting Protein Function by Multi-label Correlated Semi-supervised Learning PrePrint: On the Application of Active Learning and Gaussian Processes in Post-Cryopreservation Cell Membrane Integrity Experiments PrePrint: Quantitative Analysis of the Self-assembly Strategies of Intermediate Filaments from Tetrameric Vimentin PrePrint: Stochastic Gene Expression Modeling with Hill Function for Switch-like Gene Responses PrePrint: Gene Classification using Parameter-free Semi-supervised Manifold Learning